Detailed information of SNP:
|
SNP ID:
sf0906126537(Gbrowse)
Chromosome: chr09 Position: 6126537 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1412 | 96.32% | 3.68% |
| All Indica | 793 | 97.23% | 2.77% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 66 | 65.15% | 34.85% |
| Indica I | 374 | 97.86% | 2.14% |
| Indica II | 209 | 96.17% | 3.83% |
| Indica Intermediate | 210 | 97.14% | 2.86% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 85.71% | 14.29% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0906126537 | G->A | LOC_Os09g11030(LOC_Os09g11030.1) | Non-Synonymous SNP |