Detailed information of SNP:
|
SNP ID:
sf0906130677(Gbrowse)
Chromosome: chr09 Position: 6130677 |
Major allele:
T
Minor allele: G Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1389 | 79.27% | 20.73% |
| All Indica | 769 | 69.83% | 30.17% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 67 | 25.37% | 74.63% |
| Indica I | 363 | 68.04% | 31.96% |
| Indica II | 199 | 78.89% | 21.11% |
| Indica Intermediate | 207 | 64.25% | 35.75% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 85.71% | 14.29% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0906130677 | T->G | LOC_Os09g11040(LOC_Os09g11040.1) | Non-Synonymous SNP |