Detailed information of SNP:
|
SNP ID:
sf0906162068(Gbrowse)
Chromosome: chr09 Position: 6162068 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1409 | 94.89% | 5.11% |
| All Indica | 792 | 92.42% | 7.58% |
| All Japonica | 495 | 98.18% | 1.82% |
| Aus | 67 | 97.01% | 2.99% |
| Indica I | 371 | 89.22% | 10.78% |
| Indica II | 212 | 96.70% | 3.30% |
| Indica Intermediate | 209 | 93.78% | 6.22% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 92 | 93.48% | 6.52% |
| Japonica Intermediate | 68 | 95.59% | 4.41% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 97.56% | 2.44% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0906162068 | G->A | LOC_Os09g11110(LOC_Os09g11110.1) | SNPs that introduce stop codons |