Detailed information of SNP:
|
SNP ID:
sf0906167357(Gbrowse)
Chromosome: chr09 Position: 6167357 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1401 | 94.29% | 5.71% |
| All Indica | 787 | 91.99% | 8.01% |
| All Japonica | 496 | 97.98% | 2.02% |
| Aus | 62 | 90.32% | 9.68% |
| Indica I | 371 | 89.49% | 10.51% |
| Indica II | 211 | 95.26% | 4.74% |
| Indica Intermediate | 205 | 93.17% | 6.83% |
| Temperate Japonica | 335 | 97.61% | 2.39% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 67 | 98.51% | 1.49% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 97.62% | 2.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0906167357 | G->A | LOC_Os09g11130(LOC_Os09g11130.1) | SNPs that introduce stop codons |