Detailed information of SNP:
|
SNP ID:
sf0906169235(Gbrowse)
Chromosome: chr09 Position: 6169235 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1359 | 89.62% | 10.38% |
| All Indica | 750 | 85.87% | 14.13% |
| All Japonica | 496 | 95.77% | 4.23% |
| Aus | 57 | 84.21% | 15.79% |
| Indica I | 344 | 85.17% | 14.83% |
| Indica II | 207 | 89.37% | 10.63% |
| Indica Intermediate | 199 | 83.42% | 16.58% |
| Temperate Japonica | 334 | 95.51% | 4.49% |
| Tropical Japonica | 94 | 96.81% | 3.19% |
| Japonica Intermediate | 68 | 95.59% | 4.41% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 88.10% | 11.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0906169235 | A->G | INTERGENIC | None |