Detailed information of SNP:
|
SNP ID:
sf0906197689(Gbrowse)
Chromosome: chr09 Position: 6197689 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1417 | 61.75% | 38.25% |
| All Indica | 797 | 38.77% | 61.23% |
| All Japonica | 497 | 98.99% | 1.01% |
| Aus | 67 | 53.73% | 46.27% |
| Indica I | 375 | 28.00% | 72.00% |
| Indica II | 211 | 57.82% | 42.18% |
| Indica Intermediate | 211 | 38.86% | 61.14% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 96.81% | 3.19% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 42 | 61.90% | 38.10% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0906197689 | G->A | INTERGENIC | None |