Detailed information of SNP:
|
SNP ID:
sf0906198234(Gbrowse)
Chromosome: chr09 Position: 6198234 |
Major allele:
A
Minor allele: T Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1384 | 79.05% | 20.95% |
| All Indica | 774 | 77.00% | 23.00% |
| All Japonica | 492 | 82.72% | 17.28% |
| Aus | 65 | 78.46% | 21.54% |
| Indica I | 372 | 86.83% | 13.17% |
| Indica II | 199 | 62.81% | 37.19% |
| Indica Intermediate | 203 | 72.91% | 27.09% |
| Temperate Japonica | 332 | 91.57% | 8.43% |
| Tropical Japonica | 94 | 78.72% | 21.28% |
| Japonica Intermediate | 66 | 43.94% | 56.06% |
| Group VI/Aromatic | 13 | 53.85% | 46.15% |
| Intermediate | 40 | 82.50% | 17.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0906198234 | A->T | INTERGENIC | None |