Detailed information of SNP:



SNP ID: sf0906201716(Gbrowse)

Chromosome: chr09

Position: 6201716
Major allele: C

Minor allele: T

Reference allele: C

Allele Frequencies:


NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.


PopulationsPopulation SizeFrequency of C(major allele)Frequency of T(minor allele)
All1418 93.79% 6.21%
All Indica798 92.11% 7.89%
All Japonica497 95.98% 4.02%
Aus67 98.51% 1.49%
Indica I374 88.50% 11.50%
Indica II213 99.53% 0.47%
Indica Intermediate211 91.00% 9.00%
Temperate Japonica335 97.31% 2.69%
Tropical Japonica94 92.55% 7.45%
Japonica Intermediate68 94.12% 5.88%
Group VI/Aromatic14 85.71% 14.29%
Intermediate42 95.24% 4.76%

Allele Var Effect:


SNP ID Var Gene Effect/Location
sf0906201716 C->T INTERGENIC None