Detailed information of SNP:
SNP ID:
sf0906201716(Gbrowse)
Chromosome: chr09 Position: 6201716 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
---|---|---|---|
All | 1418 | 93.79% | 6.21% |
All Indica | 798 | 92.11% | 7.89% |
All Japonica | 497 | 95.98% | 4.02% |
Aus | 67 | 98.51% | 1.49% |
Indica I | 374 | 88.50% | 11.50% |
Indica II | 213 | 99.53% | 0.47% |
Indica Intermediate | 211 | 91.00% | 9.00% |
Temperate Japonica | 335 | 97.31% | 2.69% |
Tropical Japonica | 94 | 92.55% | 7.45% |
Japonica Intermediate | 68 | 94.12% | 5.88% |
Group VI/Aromatic | 14 | 85.71% | 14.29% |
Intermediate | 42 | 95.24% | 4.76% |
Allele Var Effect:
SNP ID | Var | Gene | Effect/Location |
---|---|---|---|
sf0906201716 | C->T | INTERGENIC | None |