Detailed information of SNP:
|
SNP ID:
sf0906205648(Gbrowse)
Chromosome: chr09 Position: 6205648 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1411 | 63.57% | 36.43% |
| All Indica | 798 | 90.48% | 9.52% |
| All Japonica | 497 | 16.10% | 83.90% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 374 | 86.63% | 13.37% |
| Indica II | 213 | 97.65% | 2.35% |
| Indica Intermediate | 211 | 90.05% | 9.95% |
| Temperate Japonica | 335 | 9.25% | 90.75% |
| Tropical Japonica | 94 | 14.89% | 85.11% |
| Japonica Intermediate | 68 | 51.47% | 48.53% |
| Group VI/Aromatic | 11 | 81.82% | 18.18% |
| Intermediate | 38 | 52.63% | 47.37% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0906205648 | A->G | LOC_Os09g11190(LOC_Os09g11190.1) | INTRON |