Detailed information of SNP:
|
SNP ID:
sf0906212033(Gbrowse)
Chromosome: chr09 Position: 6212033 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1390 | 66.83% | 33.17% |
| All Indica | 795 | 61.01% | 38.99% |
| All Japonica | 483 | 78.88% | 21.12% |
| Aus | 67 | 46.27% | 53.73% |
| Indica I | 374 | 74.87% | 25.13% |
| Indica II | 212 | 37.74% | 62.26% |
| Indica Intermediate | 209 | 59.81% | 40.19% |
| Temperate Japonica | 324 | 87.35% | 12.65% |
| Tropical Japonica | 93 | 78.49% | 21.51% |
| Japonica Intermediate | 66 | 37.88% | 62.12% |
| Group VI/Aromatic | 6 | 66.67% | 33.33% |
| Intermediate | 39 | 71.79% | 28.21% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0906212033 | A->G | INTERGENIC | None |