Detailed information of SNP:
|
SNP ID:
sf0906216253(Gbrowse)
Chromosome: chr09 Position: 6216253 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1416 | 94.49% | 5.51% |
| All Indica | 797 | 92.85% | 7.15% |
| All Japonica | 496 | 96.57% | 3.43% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 89.07% | 10.93% |
| Indica II | 213 | 99.53% | 0.47% |
| Indica Intermediate | 209 | 92.82% | 7.18% |
| Temperate Japonica | 335 | 97.61% | 2.39% |
| Tropical Japonica | 93 | 94.62% | 5.38% |
| Japonica Intermediate | 68 | 94.12% | 5.88% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 42 | 95.24% | 4.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0906216253 | G->A | INTERGENIC | None |