Detailed information of SNP:
|
SNP ID:
sf0906273104(Gbrowse)
Chromosome: chr09 Position: 6273104 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1414 | 88.47% | 11.53% |
| All Indica | 797 | 88.71% | 11.29% |
| All Japonica | 494 | 86.03% | 13.97% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 374 | 83.69% | 16.31% |
| Indica II | 212 | 97.64% | 2.36% |
| Indica Intermediate | 211 | 88.63% | 11.37% |
| Temperate Japonica | 333 | 89.79% | 10.21% |
| Tropical Japonica | 94 | 84.04% | 15.96% |
| Japonica Intermediate | 67 | 70.15% | 29.85% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 90.48% | 9.52% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0906273104 | G->A | LOC_Os09g11300(LOC_Os09g11300.1) | Non-Synonymous SNP |