Detailed information of SNP:
|
SNP ID:
sf0906285694(Gbrowse)
Chromosome: chr09 Position: 6285694 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1245 | 89.72% | 10.28% |
| All Indica | 628 | 91.08% | 8.92% |
| All Japonica | 497 | 99.40% | 0.60% |
| Aus | 67 | 26.87% | 73.13% |
| Indica I | 363 | 91.18% | 8.82% |
| Indica II | 98 | 86.73% | 13.27% |
| Indica Intermediate | 167 | 93.41% | 6.59% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 95.59% | 4.41% |
| Group VI/Aromatic | 14 | 21.43% | 78.57% |
| Intermediate | 39 | 76.92% | 23.08% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0906285694 | C->T | LOC_Os09g11320(LOC_Os09g11320.1) | INTRON |