Detailed information of SNP:
|
SNP ID:
sf0906299837(Gbrowse)
Chromosome: chr09 Position: 6299837 |
Major allele:
T
Minor allele: G Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1381 | 51.19% | 48.81% |
| All Indica | 769 | 25.62% | 74.38% |
| All Japonica | 492 | 96.95% | 3.05% |
| Aus | 65 | 15.38% | 84.62% |
| Indica I | 359 | 33.98% | 66.02% |
| Indica II | 205 | 4.88% | 95.12% |
| Indica Intermediate | 205 | 31.71% | 68.29% |
| Temperate Japonica | 333 | 98.80% | 1.20% |
| Tropical Japonica | 94 | 96.81% | 3.19% |
| Japonica Intermediate | 65 | 87.69% | 12.31% |
| Group VI/Aromatic | 13 | 15.38% | 84.62% |
| Intermediate | 42 | 50.00% | 50.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0906299837 | T->G | INTERGENIC | None |