Detailed information of SNP:
|
SNP ID:
sf0906302350(Gbrowse)
Chromosome: chr09 Position: 6302350 |
Major allele:
C
Minor allele: G Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1408 | 56.25% | 43.75% |
| All Indica | 788 | 35.91% | 64.09% |
| All Japonica | 497 | 82.49% | 17.51% |
| Aus | 67 | 85.07% | 14.93% |
| Indica I | 374 | 25.94% | 74.06% |
| Indica II | 206 | 54.85% | 45.15% |
| Indica Intermediate | 208 | 35.10% | 64.90% |
| Temperate Japonica | 335 | 89.55% | 10.45% |
| Tropical Japonica | 94 | 84.04% | 15.96% |
| Japonica Intermediate | 68 | 45.59% | 54.41% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 42 | 71.43% | 28.57% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0906302350 | C->G | INTERGENIC | None |