Detailed information of SNP:
|
SNP ID:
sf0906312471(Gbrowse)
Chromosome: chr09 Position: 6312471 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1394 | 58.25% | 41.75% |
| All Indica | 775 | 39.35% | 60.65% |
| All Japonica | 497 | 94.97% | 5.03% |
| Aus | 67 | 13.43% | 86.57% |
| Indica I | 359 | 28.13% | 71.87% |
| Indica II | 211 | 54.50% | 45.50% |
| Indica Intermediate | 205 | 43.41% | 56.59% |
| Temperate Japonica | 335 | 98.51% | 1.49% |
| Tropical Japonica | 94 | 97.87% | 2.13% |
| Japonica Intermediate | 68 | 73.53% | 26.47% |
| Group VI/Aromatic | 14 | 14.29% | 85.71% |
| Intermediate | 41 | 58.54% | 41.46% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0906312471 | A->G | INTERGENIC | None |