Detailed information of SNP:
|
SNP ID:
sf0906312973(Gbrowse)
Chromosome: chr09 Position: 6312973 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1404 | 70.94% | 29.06% |
| All Indica | 786 | 49.87% | 50.13% |
| All Japonica | 496 | 98.99% | 1.01% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 367 | 37.87% | 62.13% |
| Indica II | 212 | 66.04% | 33.96% |
| Indica Intermediate | 207 | 54.59% | 45.41% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 93 | 97.85% | 2.15% |
| Japonica Intermediate | 68 | 95.59% | 4.41% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 80.49% | 19.51% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0906312973 | G->A | INTERGENIC | None |