Detailed information of SNP:
|
SNP ID:
sf0906313868(Gbrowse)
Chromosome: chr09 Position: 6313868 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1413 | 68.22% | 31.78% |
| All Indica | 794 | 47.98% | 52.02% |
| All Japonica | 496 | 94.56% | 5.44% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 373 | 37.80% | 62.20% |
| Indica II | 213 | 66.20% | 33.80% |
| Indica Intermediate | 208 | 47.60% | 52.40% |
| Temperate Japonica | 335 | 97.91% | 2.09% |
| Tropical Japonica | 94 | 95.74% | 4.26% |
| Japonica Intermediate | 67 | 76.12% | 23.88% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 78.57% | 21.43% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0906313868 | G->A | INTERGENIC | None |