Detailed information of SNP:
|
SNP ID:
sf0906349119(Gbrowse)
Chromosome: chr09 Position: 6349119 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1387 | 88.10% | 11.90% |
| All Indica | 769 | 80.88% | 19.12% |
| All Japonica | 497 | 97.38% | 2.62% |
| Aus | 65 | 95.38% | 4.62% |
| Indica I | 363 | 91.18% | 8.82% |
| Indica II | 202 | 62.87% | 37.13% |
| Indica Intermediate | 204 | 80.39% | 19.61% |
| Temperate Japonica | 335 | 97.01% | 2.99% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 95.59% | 4.41% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 95.24% | 4.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0906349119 | C->T | LOC_Os09g11400(LOC_Os09g11400.1) | Synonymous |