Detailed information of SNP:
|
SNP ID:
sf0906357576(Gbrowse)
Chromosome: chr09 Position: 6357576 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1399 | 91.07% | 8.93% |
| All Indica | 796 | 88.82% | 11.18% |
| All Japonica | 482 | 94.81% | 5.19% |
| Aus | 65 | 87.69% | 12.31% |
| Indica I | 374 | 87.17% | 12.83% |
| Indica II | 212 | 90.09% | 9.91% |
| Indica Intermediate | 210 | 90.48% | 9.52% |
| Temperate Japonica | 330 | 94.24% | 5.76% |
| Tropical Japonica | 93 | 97.85% | 2.15% |
| Japonica Intermediate | 59 | 93.22% | 6.78% |
| Group VI/Aromatic | 14 | 78.57% | 21.43% |
| Intermediate | 42 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0906357576 | A->G | LOC_Os09g11420(LOC_Os09g11420.1) | INTRON |