Detailed information of SNP:
|
SNP ID:
sf0906398143(Gbrowse)
Chromosome: chr09 Position: 6398143 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1414 | 65.28% | 34.72% |
| All Indica | 794 | 95.47% | 4.53% |
| All Japonica | 497 | 17.10% | 82.90% |
| Aus | 67 | 61.19% | 38.81% |
| Indica I | 370 | 95.95% | 4.05% |
| Indica II | 213 | 95.77% | 4.23% |
| Indica Intermediate | 211 | 94.31% | 5.69% |
| Temperate Japonica | 335 | 9.55% | 90.45% |
| Tropical Japonica | 94 | 13.83% | 86.17% |
| Japonica Intermediate | 68 | 58.82% | 41.18% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 61.90% | 38.10% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0906398143 | T->C | INTERGENIC | None |