Detailed information of SNP:
|
SNP ID:
sf0906426214(Gbrowse)
Chromosome: chr09 Position: 6426214 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1347 | 85.89% | 14.11% |
| All Indica | 790 | 84.94% | 15.06% |
| All Japonica | 434 | 95.85% | 4.15% |
| Aus | 67 | 40.30% | 59.70% |
| Indica I | 371 | 79.51% | 20.49% |
| Indica II | 213 | 91.08% | 8.92% |
| Indica Intermediate | 206 | 88.35% | 11.65% |
| Temperate Japonica | 315 | 96.19% | 3.81% |
| Tropical Japonica | 84 | 98.81% | 1.19% |
| Japonica Intermediate | 35 | 85.71% | 14.29% |
| Group VI/Aromatic | 14 | 78.57% | 21.43% |
| Intermediate | 42 | 76.19% | 23.81% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0906426214 | T->C | INTERGENIC | None |