Detailed information of SNP:
|
SNP ID:
sf0906442883(Gbrowse)
Chromosome: chr09 Position: 6442883 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1412 | 97.03% | 2.97% |
| All Indica | 793 | 95.46% | 4.54% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 66 | 98.48% | 1.52% |
| Indica I | 375 | 98.67% | 1.33% |
| Indica II | 212 | 93.40% | 6.60% |
| Indica Intermediate | 206 | 91.75% | 8.25% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 78.57% | 21.43% |
| Intermediate | 42 | 95.24% | 4.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0906442883 | A->G | INTERGENIC | None |