Detailed information of SNP:
|
SNP ID:
sf0906458575(Gbrowse)
Chromosome: chr09 Position: 6458575 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1418 | 87.02% | 12.98% |
| All Indica | 798 | 94.49% | 5.51% |
| All Japonica | 497 | 86.32% | 13.68% |
| Aus | 67 | 19.40% | 80.60% |
| Indica I | 375 | 97.87% | 2.13% |
| Indica II | 213 | 86.85% | 13.15% |
| Indica Intermediate | 210 | 96.19% | 3.81% |
| Temperate Japonica | 335 | 94.03% | 5.97% |
| Tropical Japonica | 94 | 88.30% | 11.70% |
| Japonica Intermediate | 68 | 45.59% | 54.41% |
| Group VI/Aromatic | 14 | 28.57% | 71.43% |
| Intermediate | 42 | 80.95% | 19.05% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0906458575 | T->C | LOC_Os09g11580(LOC_Os09g11580.1) | Non-Synonymous SNP |