Detailed information of SNP:
|
SNP ID:
sf0906471621(Gbrowse)
Chromosome: chr09 Position: 6471621 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1419 | 70.89% | 29.11% |
| All Indica | 799 | 63.08% | 36.92% |
| All Japonica | 497 | 86.12% | 13.88% |
| Aus | 67 | 58.21% | 41.79% |
| Indica I | 375 | 74.67% | 25.33% |
| Indica II | 213 | 44.13% | 55.87% |
| Indica Intermediate | 211 | 61.61% | 38.39% |
| Temperate Japonica | 335 | 94.03% | 5.97% |
| Tropical Japonica | 94 | 88.30% | 11.70% |
| Japonica Intermediate | 68 | 44.12% | 55.88% |
| Group VI/Aromatic | 14 | 14.29% | 85.71% |
| Intermediate | 42 | 78.57% | 21.43% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0906471621 | C->T | INTERGENIC | None |