Detailed information of SNP:
|
SNP ID:
sf0906476614(Gbrowse)
Chromosome: chr09 Position: 6476614 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1392 | 95.47% | 4.53% |
| All Indica | 789 | 96.58% | 3.42% |
| All Japonica | 496 | 99.80% | 0.20% |
| Aus | 55 | 49.09% | 50.91% |
| Indica I | 373 | 100.00% | 0.00% |
| Indica II | 206 | 88.83% | 11.17% |
| Indica Intermediate | 210 | 98.10% | 1.90% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 67 | 100.00% | 0.00% |
| Group VI/Aromatic | 11 | 45.45% | 54.55% |
| Intermediate | 41 | 97.56% | 2.44% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0906476614 | G->A | LOC_Os09g11600(LOC_Os09g11600.1) | Synonymous |