Detailed information of SNP:
|
SNP ID:
sf0906477875(Gbrowse)
Chromosome: chr09 Position: 6477875 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1406 | 93.88% | 6.12% |
| All Indica | 793 | 95.84% | 4.16% |
| All Japonica | 496 | 99.80% | 0.20% |
| Aus | 64 | 32.81% | 67.19% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 209 | 86.12% | 13.88% |
| Indica Intermediate | 209 | 98.09% | 1.91% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 67 | 100.00% | 0.00% |
| Group VI/Aromatic | 11 | 36.36% | 63.64% |
| Intermediate | 42 | 95.24% | 4.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0906477875 | A->G | LOC_Os09g11600(LOC_Os09g11600.1) | Synonymous |