Detailed information of SNP:
|
SNP ID:
sf0906480295(Gbrowse)
Chromosome: chr09 Position: 6480295 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1385 | 95.38% | 4.62% |
| All Indica | 769 | 92.33% | 7.67% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 63 | 100.00% | 0.00% |
| Indica I | 368 | 96.74% | 3.26% |
| Indica II | 202 | 90.10% | 9.90% |
| Indica Intermediate | 199 | 86.43% | 13.57% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 90.48% | 9.52% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0906480295 | T->C | LOC_Os09g11610(LOC_Os09g11610.1) | Synonymous |