Detailed information of SNP:
|
SNP ID:
sf0906480589(Gbrowse)
Chromosome: chr09 Position: 6480589 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1393 | 98.42% | 1.58% |
| All Indica | 779 | 97.43% | 2.57% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 63 | 98.41% | 1.59% |
| Indica I | 368 | 99.18% | 0.82% |
| Indica II | 205 | 95.12% | 4.88% |
| Indica Intermediate | 206 | 96.60% | 3.40% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 13 | 92.31% | 7.69% |
| Intermediate | 41 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0906480589 | A->G | LOC_Os09g11610(LOC_Os09g11610.1) | Synonymous |