Detailed information of SNP:
|
SNP ID:
sf0906480626(Gbrowse)
Chromosome: chr09 Position: 6480626 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1372 | 91.33% | 8.67% |
| All Indica | 763 | 86.50% | 13.50% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 61 | 81.97% | 18.03% |
| Indica I | 364 | 92.86% | 7.14% |
| Indica II | 200 | 82.50% | 17.50% |
| Indica Intermediate | 199 | 78.89% | 21.11% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 11 | 54.55% | 45.45% |
| Intermediate | 40 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0906480626 | T->C | LOC_Os09g11610(LOC_Os09g11610.1) | Non-Synonymous SNP |