Detailed information of SNP:
|
SNP ID:
sf0906481532(Gbrowse)
Chromosome: chr09 Position: 6481532 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1357 | 94.92% | 5.08% |
| All Indica | 763 | 92.14% | 7.86% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 47 | 89.36% | 10.64% |
| Indica I | 361 | 95.57% | 4.43% |
| Indica II | 204 | 86.27% | 13.73% |
| Indica Intermediate | 198 | 91.92% | 8.08% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 13 | 76.92% | 23.08% |
| Intermediate | 37 | 97.30% | 2.70% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0906481532 | G->A | LOC_Os09g11610(LOC_Os09g11610.1) | INTRON |