Detailed information of SNP:
|
SNP ID:
sf0906482706(Gbrowse)
Chromosome: chr09 Position: 6482706 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1406 | 93.88% | 6.12% |
| All Indica | 791 | 91.53% | 8.47% |
| All Japonica | 493 | 99.59% | 0.41% |
| Aus | 67 | 85.07% | 14.93% |
| Indica I | 373 | 97.05% | 2.95% |
| Indica II | 207 | 91.79% | 8.21% |
| Indica Intermediate | 211 | 81.52% | 18.48% |
| Temperate Japonica | 334 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 65 | 98.46% | 1.54% |
| Group VI/Aromatic | 13 | 61.54% | 38.46% |
| Intermediate | 42 | 95.24% | 4.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0906482706 | T->C | LOC_Os09g11610(LOC_Os09g11610.1) | Non-Synonymous SNP |