Detailed information of SNP:
|
SNP ID:
sf0906502065(Gbrowse)
Chromosome: chr09 Position: 6502065 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1365 | 70.48% | 29.52% |
| All Indica | 746 | 62.33% | 37.67% |
| All Japonica | 497 | 86.52% | 13.48% |
| Aus | 66 | 37.88% | 62.12% |
| Indica I | 351 | 54.13% | 45.87% |
| Indica II | 202 | 79.21% | 20.79% |
| Indica Intermediate | 193 | 59.59% | 40.41% |
| Temperate Japonica | 335 | 94.03% | 5.97% |
| Tropical Japonica | 94 | 88.30% | 11.70% |
| Japonica Intermediate | 68 | 47.06% | 52.94% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 66.67% | 33.33% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0906502065 | T->C | INTERGENIC | None |