Detailed information of SNP:
|
SNP ID:
sf0906502067(Gbrowse)
Chromosome: chr09 Position: 6502067 |
Major allele:
G
Minor allele: T Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1418 | 90.41% | 9.59% |
| All Indica | 798 | 86.34% | 13.66% |
| All Japonica | 497 | 95.57% | 4.43% |
| Aus | 67 | 94.03% | 5.97% |
| Indica I | 374 | 77.54% | 22.46% |
| Indica II | 213 | 99.53% | 0.47% |
| Indica Intermediate | 211 | 88.63% | 11.37% |
| Temperate Japonica | 335 | 98.21% | 1.79% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 77.94% | 22.06% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 97.62% | 2.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0906502067 | G->T | INTERGENIC | None |