Detailed information of SNP:
|
SNP ID:
sf0906522974(Gbrowse)
Chromosome: chr09 Position: 6522974 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1354 | 70.38% | 29.62% |
| All Indica | 736 | 64.95% | 35.05% |
| All Japonica | 497 | 83.10% | 16.90% |
| Aus | 67 | 37.31% | 62.69% |
| Indica I | 341 | 66.28% | 33.72% |
| Indica II | 205 | 67.32% | 32.68% |
| Indica Intermediate | 190 | 60.00% | 40.00% |
| Temperate Japonica | 335 | 90.45% | 9.55% |
| Tropical Japonica | 94 | 87.23% | 12.77% |
| Japonica Intermediate | 68 | 41.18% | 58.82% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 40 | 62.50% | 37.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0906522974 | T->C | INTERGENIC | None |