Detailed information of SNP:
|
SNP ID:
sf0906524065(Gbrowse)
Chromosome: chr09 Position: 6524065 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1402 | 89.66% | 10.34% |
| All Indica | 786 | 84.86% | 15.14% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 63 | 82.54% | 17.46% |
| Indica I | 375 | 96.80% | 3.20% |
| Indica II | 204 | 66.18% | 33.82% |
| Indica Intermediate | 207 | 81.64% | 18.36% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 21.43% | 78.57% |
| Intermediate | 42 | 90.48% | 9.52% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0906524065 | C->T | LOC_Os09g11690(LOC_Os09g11690.1) | Non-Synonymous SNP |