Detailed information of SNP:
|
SNP ID:
sf0906524232(Gbrowse)
Chromosome: chr09 Position: 6524232 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1404 | 87.39% | 12.61% |
| All Indica | 787 | 81.19% | 18.81% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 65 | 78.46% | 21.54% |
| Indica I | 372 | 97.58% | 2.42% |
| Indica II | 206 | 52.91% | 47.09% |
| Indica Intermediate | 209 | 79.90% | 20.10% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 13 | 23.08% | 76.92% |
| Intermediate | 42 | 88.10% | 11.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0906524232 | A->G | LOC_Os09g11690(LOC_Os09g11690.1) | Synonymous |