Detailed information of SNP:
|
SNP ID:
sf0906526724(Gbrowse)
Chromosome: chr09 Position: 6526724 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1413 | 84.29% | 15.71% |
| All Indica | 795 | 77.48% | 22.52% |
| All Japonica | 496 | 99.19% | 0.81% |
| Aus | 66 | 66.67% | 33.33% |
| Indica I | 373 | 96.25% | 3.75% |
| Indica II | 213 | 46.01% | 53.99% |
| Indica Intermediate | 209 | 76.08% | 23.92% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 67 | 95.52% | 4.48% |
| Group VI/Aromatic | 14 | 14.29% | 85.71% |
| Intermediate | 42 | 88.10% | 11.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0906526724 | G->A | INTERGENIC | None |