Detailed information of SNP:
|
SNP ID:
sf0906539051(Gbrowse)
Chromosome: chr09 Position: 6539051 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1417 | 73.39% | 26.61% |
| All Indica | 797 | 70.14% | 29.86% |
| All Japonica | 497 | 89.74% | 10.26% |
| Aus | 67 | 11.94% | 88.06% |
| Indica I | 374 | 90.11% | 9.89% |
| Indica II | 213 | 35.21% | 64.79% |
| Indica Intermediate | 210 | 70.00% | 30.00% |
| Temperate Japonica | 335 | 95.52% | 4.48% |
| Tropical Japonica | 94 | 87.23% | 12.77% |
| Japonica Intermediate | 68 | 64.71% | 35.29% |
| Group VI/Aromatic | 14 | 14.29% | 85.71% |
| Intermediate | 42 | 59.52% | 40.48% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0906539051 | T->C | LOC_Os09g11720(LOC_Os09g11720.1) | Non-Synonymous SNP |