Detailed information of SNP:
|
SNP ID:
sf0906546680(Gbrowse)
Chromosome: chr09 Position: 6546680 |
Major allele:
T
Minor allele: A Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1345 | 62.01% | 37.99% |
| All Indica | 793 | 42.12% | 57.88% |
| All Japonica | 432 | 97.69% | 2.31% |
| Aus | 67 | 59.70% | 40.30% |
| Indica I | 373 | 28.95% | 71.05% |
| Indica II | 213 | 64.32% | 35.68% |
| Indica Intermediate | 207 | 43.00% | 57.00% |
| Temperate Japonica | 274 | 96.72% | 3.28% |
| Tropical Japonica | 92 | 98.91% | 1.09% |
| Japonica Intermediate | 66 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 39 | 61.54% | 38.46% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0906546680 | T->A | LOC_Os09g11730(LOC_Os09g11730.1) | INTRON |