Detailed information of SNP:
|
SNP ID:
sf0906560460(Gbrowse)
Chromosome: chr09 Position: 6560460 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1405 | 52.46% | 47.54% |
| All Indica | 786 | 27.23% | 72.77% |
| All Japonica | 497 | 98.79% | 1.21% |
| Aus | 66 | 15.15% | 84.85% |
| Indica I | 373 | 27.88% | 72.12% |
| Indica II | 205 | 19.51% | 80.49% |
| Indica Intermediate | 208 | 33.65% | 66.35% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 97.87% | 2.13% |
| Japonica Intermediate | 68 | 95.59% | 4.41% |
| Group VI/Aromatic | 14 | 14.29% | 85.71% |
| Intermediate | 42 | 47.62% | 52.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0906560460 | G->A | LOC_Os09g11740(LOC_Os09g11740.1) | Non-Synonymous SNP |