Detailed information of SNP:
|
SNP ID:
sf0906566849(Gbrowse)
Chromosome: chr09 Position: 6566849 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1416 | 67.09% | 32.91% |
| All Indica | 798 | 75.56% | 24.44% |
| All Japonica | 496 | 64.92% | 35.08% |
| Aus | 67 | 8.96% | 91.04% |
| Indica I | 374 | 79.95% | 20.05% |
| Indica II | 213 | 60.56% | 39.44% |
| Indica Intermediate | 211 | 82.94% | 17.06% |
| Temperate Japonica | 335 | 88.66% | 11.34% |
| Tropical Japonica | 94 | 10.64% | 89.36% |
| Japonica Intermediate | 67 | 22.39% | 77.61% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 41 | 46.34% | 53.66% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0906566849 | T->C | INTERGENIC | None |