Detailed information of SNP:
|
SNP ID:
sf0906568206(Gbrowse)
Chromosome: chr09 Position: 6568206 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1360 | 54.56% | 45.44% |
| All Indica | 763 | 67.23% | 32.77% |
| All Japonica | 496 | 34.48% | 65.52% |
| Aus | 54 | 55.56% | 44.44% |
| Indica I | 372 | 61.56% | 38.44% |
| Indica II | 185 | 71.89% | 28.11% |
| Indica Intermediate | 206 | 73.30% | 26.70% |
| Temperate Japonica | 335 | 10.45% | 89.55% |
| Tropical Japonica | 94 | 90.43% | 9.57% |
| Japonica Intermediate | 67 | 76.12% | 23.88% |
| Group VI/Aromatic | 9 | 55.56% | 44.44% |
| Intermediate | 38 | 60.53% | 39.47% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0906568206 | A->G | LOC_Os09g11750(LOC_Os09g11750.1) | INTRON |