Detailed information of SNP:
|
SNP ID:
sf0906568622(Gbrowse)
Chromosome: chr09 Position: 6568622 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1398 | 76.32% | 23.68% |
| All Indica | 779 | 58.02% | 41.98% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 364 | 50.27% | 49.73% |
| Indica II | 211 | 71.09% | 28.91% |
| Indica Intermediate | 204 | 58.33% | 41.67% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 92.68% | 7.32% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0906568622 | C->T | LOC_Os09g11750(LOC_Os09g11750.1) | Non-Synonymous SNP |