Detailed information of SNP:
|
SNP ID:
sf0906611050(Gbrowse)
Chromosome: chr09 Position: 6611050 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1378 | 87.88% | 12.12% |
| All Indica | 758 | 78.23% | 21.77% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 349 | 78.22% | 21.78% |
| Indica II | 208 | 79.33% | 20.67% |
| Indica Intermediate | 201 | 77.11% | 22.89% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 97.62% | 2.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0906611050 | C->T | LOC_Os09g11820(LOC_Os09g11820.1) | INTRON |