Detailed information of SNP:
|
SNP ID:
sf0906623349(Gbrowse)
Chromosome: chr09 Position: 6623349 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1418 | 67.91% | 32.09% |
| All Indica | 798 | 88.60% | 11.40% |
| All Japonica | 497 | 31.39% | 68.61% |
| Aus | 67 | 92.54% | 7.46% |
| Indica I | 375 | 97.07% | 2.93% |
| Indica II | 213 | 69.95% | 30.05% |
| Indica Intermediate | 210 | 92.38% | 7.62% |
| Temperate Japonica | 335 | 30.15% | 69.85% |
| Tropical Japonica | 94 | 13.83% | 86.17% |
| Japonica Intermediate | 68 | 61.76% | 38.24% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 42 | 61.90% | 38.10% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0906623349 | T->C | INTERGENIC | None |