Detailed information of SNP:
|
SNP ID:
sf0906639167(Gbrowse)
Chromosome: chr09 Position: 6639167 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1412 | 78.40% | 21.60% |
| All Indica | 795 | 66.54% | 33.46% |
| All Japonica | 494 | 97.77% | 2.23% |
| Aus | 67 | 77.61% | 22.39% |
| Indica I | 373 | 66.22% | 33.78% |
| Indica II | 212 | 68.87% | 31.13% |
| Indica Intermediate | 210 | 64.76% | 35.24% |
| Temperate Japonica | 332 | 97.89% | 2.11% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 95.59% | 4.41% |
| Group VI/Aromatic | 14 | 71.43% | 28.57% |
| Intermediate | 42 | 78.57% | 21.43% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0906639167 | C->T | LOC_Os09g11840(LOC_Os09g11840.1) | INTRON |