Detailed information of SNP:
|
SNP ID:
sf0906643203(Gbrowse)
Chromosome: chr09 Position: 6643203 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1409 | 94.46% | 5.54% |
| All Indica | 799 | 99.12% | 0.88% |
| All Japonica | 487 | 86.65% | 13.35% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 97.18% | 2.82% |
| Indica Intermediate | 211 | 99.53% | 0.47% |
| Temperate Japonica | 334 | 98.80% | 1.20% |
| Tropical Japonica | 85 | 41.18% | 58.82% |
| Japonica Intermediate | 68 | 83.82% | 16.18% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 85.71% | 14.29% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0906643203 | C->T | LOC_Os09g11850(LOC_Os09g11850.1) | Non-Synonymous SNP |