Detailed information of SNP:
|
SNP ID:
sf0906655639(Gbrowse)
Chromosome: chr09 Position: 6655639 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1416 | 56.64% | 43.36% |
| All Indica | 796 | 86.68% | 13.32% |
| All Japonica | 497 | 3.02% | 96.98% |
| Aus | 67 | 91.04% | 8.96% |
| Indica I | 374 | 95.72% | 4.28% |
| Indica II | 213 | 69.95% | 30.05% |
| Indica Intermediate | 209 | 87.56% | 12.44% |
| Temperate Japonica | 335 | 2.99% | 97.01% |
| Tropical Japonica | 94 | 1.06% | 98.94% |
| Japonica Intermediate | 68 | 5.88% | 94.12% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 52.38% | 47.62% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0906655639 | A->G | INTERGENIC | None |