Detailed information of SNP:
|
SNP ID:
sf0906663708(Gbrowse)
Chromosome: chr09 Position: 6663708 |
Major allele:
T
Minor allele: A Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1297 | 94.14% | 5.86% |
| All Indica | 717 | 94.42% | 5.58% |
| All Japonica | 462 | 92.64% | 7.36% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 335 | 98.81% | 1.19% |
| Indica II | 192 | 84.38% | 15.62% |
| Indica Intermediate | 190 | 96.84% | 3.16% |
| Temperate Japonica | 307 | 92.51% | 7.49% |
| Tropical Japonica | 92 | 95.65% | 4.35% |
| Japonica Intermediate | 63 | 88.89% | 11.11% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 37 | 94.59% | 5.41% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0906663708 | T->A | INTERGENIC | None |